Publications

Selected Publications

Lemus OMD, Wang YF, Li F, Jambawalikar S, Horowitz DP, Xu Y, Wuu CS. Dosimetric assessment of patient dose calculation on a deep learning-based synthesized computed tomography image for adaptive radiotherapy. J Appl Clin Med Phys. 2022 Mar 25:e13595. doi: 10.1002/acm2.13595. Epub ahead of print. PMID: 35332646.

Sun S, Mutasa S, Liu MZ, Nemer J, Sun M, Siddique M, Desperito E, Jambawalikar S, Ha RS. Deep learning prediction of axillary lymph node status using ultrasound images. Comput Biol Med. 2022 Jan 24;143:105250. doi:10.1016/j.compbiomed.2022.105250. Epub ahead of print. PMID: 35114444.

Liu MZ, Swintelski C, Sun S, Siddique M, Desperito E, Jambawalikar S, Ha R. Weakly Supervised Deep Learning Approach to Breast MRI Assessment. Acad Radiol. 2022 Jan;29 Suppl 1:S166-S172. doi: 10.1016/j.acra.2021.03.032. Epub 2021 Jun 6. PMID: 34108114.

Thakur KT, Miller EH, Glendinning MD, Al-Dalahmah O, Banu MA, Boehme AK, Boubour AL, Bruce SS, Chong AM, Claassen J, Faust PL, Hargus G, Hickman RA, Jambawalikar S, Khandji AG, Kim CY, Klein RS, Lignelli-Dipple A, Lin CC, Liu Y, Miller ML, Moonis G, Nordvig AS, Overdevest JB, Prust ML, Przedborski S, Roth WH, Soung A, Tanji K, Teich AF, Agalliu D, Uhlemann AC, Goldman JE, Canoll P. COVID-19 Neuropathology at Columbia University Irving Medical Center/NewYork-Presbyterian Hospital. Brain. 2021 Oct 22;144(9):2696-2708. doi:10.1093/brain/awab148. PMID: 33856027; PMCID: PMC8083258.

Liu Y, Liu Y, Vanguri R, Litwiller D, Liu M, Hsu HY, Ha R, Shaish H, Jambawalikar S. 3D Isotropic Super-resolution Prostate MRI Using Generative Adversarial Networks and Unpaired Multiplane Slices. J Digit Imaging. 2021 Oct;34(5):1199-1208. doi: 10.1007/s10278-021-00510-w. Epub 2021 Sep 10. PMID: 34519954; PMCID: PMC8555005.

Wong TT, Quarterman P, Duong P, Rasiej MJ, Wang R, Jaramillo D, Jambawalikar SR. A Pilot Study on Feasibility of Ultrashort Echo Time T2* Cartilage Mapping in the Sacroiliac Joints. J Comput Assist Tomogr. 2021 Sep-Oct 01;45(5):717-721. doi: 10.1097/RCT.0000000000001206. PMID: 34347705.

Karakatsani ME, Pouliopoulos AN, Liu M, Jambawalikar SR, Konofagou EE. Contrast-Free Detection of Focused Ultrasound-Induced Blood-Brain Barrier Opening Using Diffusion Tensor Imaging. IEEE Trans Biomed Eng. 2021 Aug;68(8):2499-2508. doi: 10.1109/TBME.2020.3047575. Epub 2021 Jul 16. PMID: 33360980; PMCID: PMC8225708.

Keenan KE, Gimbutas Z, Dienstfrey A, Stupic KF, Boss MA, Russek SE, Chenevert TL, Prasad PV, Guo J, Reddick WE, Cecil KM, Shukla-Dave A, Aramburu Nunez D, Shridhar Konar A, Liu MZ, Jambawalikar SR, Schwartz LH, Zheng J, Hu P, Jackson EF. Multi-site, multi-platform comparison of MRI T1 measurement using the system phantom. PLoS One. 2021 Jun 30;16(6):e0252966. doi: 10.1371/journal.pone.0252966. PMID: 34191819; PMCID: PMC8244851.

Desai AD, Caliva F, Iriondo C, Mortazi A, Jambawalikar S, Bagci U, Perslev M, Igel C, Dam EB, Gaj S, Yang M, Li X, Deniz CM, Juras V, Regatte R, Gold GE, Hargreaves BA, Pedoia V, Chaudhari AS; IWOAI Segmentation Challenge Writing Group. The International Workshop on Osteoarthritis Imaging Knee MRI Segmentation Challenge: A Multi-Institute Evaluation and Analysis Framework on a Standardized Dataset. Radiol Artif Intell. 2021 Feb 10;3(3):e200078. doi:10.1148/ryai.2021200078. PMID: 34235438; PMCID: PMC8231759.

Wong TT, Quarterman P, Lynch TS, Rasiej MJ, Jaramillo D, Jambawalikar SR. Feasibility of ultrashort echo time (UTE) T2* cartilage mapping in the hip: a pilot study. Acta Radiol. 2021 Apr 29:2841851211011563. doi:10.1177/02841851211011563. Epub ahead of print. PMID: 33926266.

Naismith RT, Bermel RA, Coffey CS, Goodman AD, Fedler J, Kearney M, Klawiter EC, Nakamura K, Narayanan S, Goebel C, Yankey J, Klingner E, Fox RJ; SPRINT-MS investigators. Effects of Ibudilast on MRI Measures in the Phase 2 SPRINT-MS Study. Neurology. 2021 Jan 26;96(4):e491-e500. doi:10.1212/WNL.0000000000011314. Epub 2020 Dec 2. PMID: 33268562; PMCID: PMC7905793.

Stember JN, Celik H, Gutman D, Swinburne N, Young R, Eskreis-Winkler S, Holodny A, Jambawalikar S, Wood BJ, Chang PD, Krupinski E, Bagci U. Integrating Eye Tracking and Speech Recognition Accurately Annotates MR Brain Images for Deep Learning: Proof of Principle. Radiol Artif Intell. 2020 Nov 11;3(1):e200047. doi: 10.1148/ryai.2020200047. PMID: 33842890; PMCID: PMC7845782.

Shaish H, Ahmed FS, Lederer D, D'Souza B, Armenta P, Salvatore M, Saqi A, Huang S, Jambawalikar S, Mutasa S. Deep Learning of Computed Tomography Virtual Wedge Resection for Prediction of Histologic Usual Interstitial Pneumonitis. Ann Am Thorac Soc. 2021 Jan;18(1):51-59. doi: 10.1513/AnnalsATS.202001-068OC. PMID: 32857594; PMCID: PMC8094440.

Kim HW, Capaccione KM, Li G, Luk L, Widemon RS, Rahman O, Beylergil V, Mitchell R, D'Souza BM, Leb JS, Dumeer S, Bentley-Hibbert S, Liu M, Jambawalikar S, Austin JHM, Salvatore M. The role of initial chest X-ray in triaging patients with suspected COVID-19 during the pandemic. Emerg Radiol. 2020 Dec;27(6):617-621. doi: 10.1007/s10140-020-01808-y. Epub 2020 Jun 22. PMID: 32572707; PMCID: PMC7306559.

Liu MZ, Mutasa S, Chang P, Siddique M, Jambawalikar S, Ha R. A novel CNN algorithm for pathological complete response prediction using an I-SPY TRIAL breast MRI database. Magn Reson Imaging. 2020 Nov;73:148-151. doi:10.1016/j.mri.2020.08.021. Epub 2020 Sep 2. PMID: 32889091; PMCID: PMC8111786.

Shaish H, Aukerman A, Vanguri R, Spinelli A, Armenta P, Jambawalikar S, Makkar J, Bentley-Hibbert S, Del Portillo A, Kiran R, Monti L, Bonifacio C, Kirienko M, Gardner KL, Schwartz L, Keller D. Radiomics of MRI for pretreatment prediction of pathologic complete response, tumor regression grade, and neoadjuvant rectal score in patients with locally advanced rectal cancer undergoing neoadjuvant chemoradiation: an international multicenter study. Eur Radiol. 2020 Nov;30(11):6263-6273. doi: 10.1007/s00330-020-06968-6. Epub 2020 Jul 14. PMID: 32500192.

Stember JN, Terilli KL, Perez E, Megjhani M, Cooper CA, Jambawalikar S, Park. S. Surface Point Cloud Ultrasound with Transcranial Doppler: Coregistration of Surface Point Cloud Ultrasound with Magnetic Resonance Angiography for Improved Reproducibility, Visualization, and Navigation in Transcranial Doppler Ultrasound. J Digit Imaging. 2020 Aug;33(4):930-936. doi:10.1007/s10278-020-00328-y. PMID: 32076925; PMCID: PMC7522153.

Liu M, Vanguri R, Mutasa S, Ha R, Liu YC, Button T, Jambawalikar S. Channel width optimized neural networks for liver and vessel segmentation in liver iron quantification. Comput Biol Med. 2020 Jul;122:103798. doi:10.1016/j.compbiomed.2020.103798. Epub 2020 May 16. PMID: 32658724.

Ren T, Cattell R, Duanmu H, Huang P, Li H, Vanguri R, Liu MZ, Jambawalikar S, Ha R, Wang F, Cohen J, Bernstein C, Bangiyev L, Duong TQ. Convolutional Neural Network Detection of Axillary Lymph Node Metastasis Using Standard Clinical Breast MRI. Clin Breast Cancer. 2020 Jun;20(3):e301-e308. doi:10.1016/j.clbc.2019.11.009. Epub 2019 Dec 5. PMID: 32139272.

Mutasa S, Chang P, Van Sant EP, Nemer J, Liu M, Karcich J, Patel G, Jambawalikar S, Ha R. Potential Role of Convolutional Neural Network Based Algorithm in Patient Selection for DCIS Observation Trials Using a Mammogram Dataset. Acad Radiol. 2020 Jun;27(6):774-779. doi: 10.1016/j.acra.2019.08.012. Epub 2019 Sep 14. PMID: 31526687; PMCID: PMC8142283.

Winther HB, Gutberlet M, Hundt C, Kaireit TF, Alsady TM, Schmidt B, Wacker F, Sun Y, Dettmer S, Maschke SK, Hinrichs JB, Jambawalikar S, Prince MR, Barr RG, Vogel-Claussen J. Deep semantic lung segmentation for tracking potential pulmonary perfusion biomarkers in chronic obstructive pulmonary disease (COPD): The multi-ethnic study of atherosclerosis COPD study. J Magn Reson Imaging. 2020 Feb;51(2):571-579. doi: 10.1002/jmri.26853. Epub 2019 Jul 5. PMID: 31276264.

Stember JN, Sheikh A, Perez E, Divgi C, Hamacher K, Jambawalikar S, Yeh R. A threshold-based method to predict thyroid nodules on scintigraphy scans. Biomed Phys Eng Express. 2020 Jan 16;6(1):015019. doi: 10.1088/2057-1976/ab6500. PMID: 33438607.

Stember JN, Chang P, Stember DM, Liu M, Grinband J, Filippi CG, Meyers P, Jambawalikar S. Convolutional Neural Networks for the Detection and Measurement of Cerebral Aneurysms on Magnetic Resonance Angiography. J Digit Imaging. 2019 Oct;32(5):808-815. doi: 10.1007/s10278-018-0162-z. PMID: 30511281; PMCID: PMC6737124.

Ha R, Chin C, Karcich J, Liu MZ, Chang P, Mutasa S, Pascual Van Sant E, Wynn RT, Connolly E, Jambawalikar S. Prior to Initiation of Chemotherapy, Can We Predict Breast Tumor Response? Deep Learning Convolutional Neural Networks Approach Using a Breast MRI Tumor Dataset. J Digit Imaging. 2019 Oct;32(5):693-701. doi: 10.1007/s10278-018-0144-1. PMID: 30361936; PMCID: PMC6737125.

Stember JN, Celik H, Krupinski E, Chang PD, Mutasa S, Wood BJ, Lignelli A, Moonis G, Schwartz LH, Jambawalikar S, Bagci U. Eye Tracking for Deep Learning Segmentation Using Convolutional Neural Networks. J Digit Imaging. 2019 Aug;32(4):597-604. doi: 10.1007/s10278-019-00220-4. PMID: 31044392; PMCID: PMC6646645.

Shukla-Dave A, Obuchowski NA, Chenevert TL, Jambawalikar S, Schwartz LH, Malyarenko D, Huang W, Noworolski SM, Young RJ, Shiroishi MS, Kim H, Coolens C, Laue H, Chung C, Rosen M, Boss M, Jackson EF. Quantitative imaging biomarkers alliance (QIBA) recommendations for improved precision of DWI and DCE-MRI derived biomarkers in multicenter oncology trials. J Magn Reson Imaging. 2019 Jun;49(7):e101-e121. doi: 10.1002/jmri.26518. Epub 2018 Nov 19. PMID: 30451345; PMCID: PMC6526078.

Ha R, Mutasa S, Karcich J, Gupta N, Pascual Van Sant E, Nemer J, Sun M, Chang P, Liu MZ, Jambawalikar S. Predicting Breast Cancer Molecular Subtype with MRI Dataset Utilizing Convolutional Neural Network Algorithm. J Digit Imaging. 2019 Apr;32(2):276-282. doi: 10.1007/s10278-019-00179-2. PMID: 30706213; PMCID: PMC6456631.

Ha R, Chang P, Karcich J, Mutasa S, Pascual Van Sant E, Liu MZ, Jambawalikar S. Convolutional Neural Network Based Breast Cancer Risk Stratification Using a Mammographic Dataset. Acad Radiol. 2019 Apr;26(4):544-549. doi:10.1016/j.acra.2018.06.020. Epub 2018 Jul 31. PMID: 30072292; PMCID: PMC8114104.

Ha R, Mutasa S, Sant EPV, Karcich J, Chin C, Liu MZ, Jambawalikar S.  Accuracy of Distinguishing Atypical Ductal Hyperplasia From Ductal Carcinoma In Situ With Convolutional Neural Network-Based Machine Learning Approach Using Mammographic Image Data. AJR Am J Roentgenol. 2019 Mar 12:1-6. doi:10.2214/AJR.18.20250. Epub ahead of print. PMID: 30860901; PMCID: PMC8111785.

Malyarenko DI, Swanson SD, Konar AS, LoCastro E, Paudyal R, Liu MZ, Jambawalikar SR, Schwartz LH, Shukla-Dave A, Chenevert TL. Multicenter Repeatability Study of a Novel Quantitative Diffusion Kurtosis Imaging Phantom. Tomography. 2019 Mar;5(1):36-43. doi: 10.18383/j.tom.2018.00030. PMID: 30854440; PMCID: PMC6403043.

Paudyal R, Konar AS, Obuchowski NA, Hatzoglou V, Chenevert TL, Malyarenko DI, Swanson SD, LoCastro E, Jambawalikar S, Liu MZ, Schwartz LH, Tuttle RM, Lee N, Shukla-Dave A. Repeatability of Quantitative Diffusion-Weighted Imaging Metrics in Phantoms, Head-and-Neck and Thyroid Cancers: Preliminary Findings. Tomography. 2019 Mar;5(1):15-25. doi: 10.18383/j.tom.2018.00044. PMID: 30854438; PMCID: PMC6403035.

Farooqi KM, Cooper C, Chelliah A, Saeed O, Chai PJ, Jambawalikar SR, Lipson H, Bacha EA, Einstein AJ, Jorde UP. 3D Printing and Heart Failure: The Present and the Future. JACC Heart Fail. 2019 Feb;7(2):132-142. doi:10.1016/j.jchf.2018.09.011. Epub 2018 Dec 12. PMID: 30553901.

Jambawalikar S, Liu MZ, Moonis G. Advanced MR Imaging of the Temporal Bone. Neuroimaging Clin N Am. 2019 Feb;29(1):197-202. doi: 10.1016/j.nic.2018.09.009. Epub 2018 Oct 31. PMID: 30466642.

Ha R, Chang P, Mutasa S, Karcich J, Goodman S, Blum E, Kalinsky K, Liu MZ, Jambawalikar S. Convolutional Neural Network Using a Breast MRI Tumor Dataset. Can Predict Oncotype Dx Recurrence Score. J Magn Reson Imaging. 2019 Feb;49(2):518-524. doi: 10.1002/jmri.26244. Epub 2018 Aug 21. PMID: 30129697; PMCID: PMC8139130.

Ha R, Chang P, Mema E, Mutasa S, Karcich J, Wynn RT, Liu MZ, Jambawalikar S. Fully Automated Convolutional Neural Network Method for Quantification of Breast MRI Fibroglandular Tissue and Background Parenchymal Enhancement. J Digit Imaging. 2019 Feb;32(1):141-147. doi: 10.1007/s10278-018-0114-7. PMID: 30076489; PMCID: PMC6382627.